rs27849943 SNP Detail

Summary

• ID
  rs27849943
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43425508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCACTACC AGCCCTGGGG
  CTTCCTGCGG GCCGCACACA CGGTGTGCCC AGGCCTCTTC GAGGAGCTGC TGCTGTTGCT
  ACAGCCCTTA GCCCTGCTAC CCTTCAGCCT GGACTTGCTG TTCCAGCACC GGCTGCTGCA
  GAGCGGGCGG CAGCAGCGGC AGCACAAGGA ACTGCTGCGT GTGTCCCAGG ACCTGCTGCT
  R
  TCTGCGCACT CAACACTGCA GTTGGCCAGG TCCCGAGGCC AGGAGGGCCC TGGAGACATG
  GACAGGGTGG CTCCTGGGGA ACGGGTGAAG GGGGTGGGTG CCTCAGAAGG TGGAGAAGAG
  GACGAGGAAG ACGCGGAAGA GGTGGCAGTG GTGGCGGGGA GCTCGGATCA TGGCAAGTGG
  GCCCGAGGGG GTCAGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005865	NES09450095	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27849943					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005865	NES09450095	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43425508 () rs orientation: forward

Symbol	Name	Function Class
Cimip2b	ciliary microtubule inner protein 2B	1511 bp downstream
Cpgi14187	CpG island 14187	237 bp proximal
Cpgi14188	CpG island 14188	1957 bp proximal
Rusc2	RUN and SH3 domain containing 2	within coordinates