rs27849998 SNP Detail

Summary

• ID
  rs27849998
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:43422135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAGTCCG GAGTGCCGGC
  CCCTTTGGGT CTAGCACCGA CTCCTCTGCC TCTACCTCCT GCTCCCCGCC TCCAGAGCAG
  GGCACAGCAG CCGACAGTGT ATCACCATGG AGCCATACCT GCCCTCCTAC TGTGCGCCCT
  GCCACATCCC AGCAGCCACC GAAGGAGGAC CAGAAGATTC CGACCTTGGC TGAGTACAGG
  M
  TTCATGGCAC AGGAAGTTTA CCCCCTCTGG GCTCCTGGAG ATCTGGCTTC ACCCGGGCAG
  AGAGTCTGGT TCGAGGAGGT GGCGAGGGCA GCATGGCCAA CAGGCCCAAC AATGGTACGA
  GCTTCATTCC AAGCAAGCCT ACATCTCTTT TGGGTGGGTT CTTAACGCTC TCAGTGGGGG
  TCACGTCCAC AGTGGCTGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38005921	NES09450240	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27849998					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38005921	NES09450240	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43422135 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14186	CpG island 14186			356 bp distal
Rr590974	regulatory region 590974			1334 bp distal
Rr590975	regulatory region 590975			1586 bp distal
Rusc2	RUN and SH3 domain containing 2			Coding-NonSynonymous
				Coding-Synonymous
				Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant