rs27850705 SNP Detail

Summary

• ID
  rs27850705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59439545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCCTAG TCTCTTGTAA
  CAAGTTTTCT TGAAGATTAT TTCTGTCCAA CAAAGAAAGA AGCCTGCTTT GGGAAGTAGT
  AGAGCACCAT GAAAGTGTGA ACATGTCTCT AGGTGTTTGG GCAAAACCAG TCTCCAGGAA
  CCCTCACAGG TCATTGCACA AATCCACTGT TCAAGACATT TTTAAAACAA CCTTTATCTC
  Y
  ACTTCTCATG CCCTTCTGCA AAATAAATAT GTATATATAC TTTAAAAAAA AACATGATGC
  ATGAAAAAAC AACTATCCAA GACTTGGACA TGGGAAGGAA AATTACTGGG TGTCTCTTTC
  AGCATGCATG GGAGTAAATG CTATCTAACC CACTTTCCGT GGATTATTCA ATTCAAAAGT
  GTACTTTTAT GAATGTCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38010731	NES09400864	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	C		T
ss321141039	CHEV_4_59452417	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27850705					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010731	NES09400864	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59439545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	752 bp distal
Rr101075	regulatory region 101075	144 bp distal
Susd1	sushi domain containing 1	912 bp upstream
Tssr37430	transcription start site region 37430	1370 bp downstream
Tssr37431	transcription start site region 37431	593 bp upstream
Tssr41933	transcription start site region 41933	1240 bp upstream
Tssr41934	transcription start site region 41934	1119 bp upstream
Tssr41935	transcription start site region 41935	866 bp upstream