rs27850708 SNP Detail

Summary

• ID
  rs27850708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59438782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGTAGC CACAGGAAAG
  GGTCTCTGAC TGGACGGGTC AGAGAGTTGG GAGGTGGTGG CCGCCCGCGC GGAGGGAAAG
  AAAGGAGAGG AAACTAGTCA TGGGCCAGTT CACCCGGGGT GCACATGCTG GAACAGGTGA
  CAAAACAAAA GTTCCAGCTA CTTGCTGGAC GACGCCCTCC TTGGCACGTT AGGAATCGAA
  Y
  GGGGAGAGAC ACGTGGTGAG AAAGACATGG AAGACAGGAC AACCGTGTAT TCTAGAAACC
  GAGGGACCGT TTTAAGGTGG GGACAAAAGG TTAGAGAAAT ATATGGCAGA GTTAAAGAAC
  TCTGCTCTGA GAGTAGGGTC AGCATCAGGG CGTGAGGGGA TCCGGGAAGG GGCAGGTGAT
  CCTCTGAATT TTGGAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010734	NES09400861	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850708					SNP	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010734	NES09400861	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59438782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	within coordinates
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	149 bp upstream
Tssr37430	transcription start site region 37430	607 bp downstream
Tssr37431	transcription start site region 37431	1356 bp upstream
Tssr41933	transcription start site region 41933	477 bp upstream
Tssr41934	transcription start site region 41934	356 bp upstream
Tssr41935	transcription start site region 41935	103 bp upstream