rs27850710 SNP Detail

Summary

• ID
  rs27850710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59437148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATGTATG TACTGTTTGC
  CATCACTCCC TCAGTGTCCT ACAATGGCTC CTGGTGGCTT CTCACCAGGA AGGAACAGTT
  AAACCCAAAC ACCATGCTCT CTCTGCCAGT CAAGATGAGA CTGACTCCCT CTTGCCAAAT
  CCAGTCTGTT TTCTCATCTC TAGCCCCTTC TGTATTCTGC GTCCTGCTTT CCCACGCTAT
  Y
  CCCAGTCTGA AATCCATCCA TTACTCTGTT GGGCTTTTCG TTTTGTTTGT TTGATCACAG
  TGTTTCACAC TGTAGATTAA ACTACTCTGG AACTCACTAT GTAGCTCAGA CTGGCCTGGA
  ACTCACGGCA GGCAATCTTT CTACCTATCT CACACATTGG ATTCCTTTTT ACACACATTT
  CTAAAGACCT CTTACTATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010736	NES09400955	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850710					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010736	NES09400955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59437148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	741 bp proximal
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	1005 bp upstream
Tssr41933	transcription start site region 41933	1142 bp downstream
Tssr41934	transcription start site region 41934	1197 bp downstream
Tssr41935	transcription start site region 41935	1502 bp downstream