rs27850711 SNP Detail

Summary

• ID
  rs27850711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59437011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCCAGAC TAATCCCAAA
  CTCATGGTGC CTCCCTCCTC CGTGTCCCAA ATTCTAGGAT TAAGCATGAA CCACCACCAC
  TCTGGAGCTC AGTGCTTGGC TTTATTAAGG AGATGCCAGA GAGAGACTGG GTGTCCTTGT
  ATGTATGTAC TGTTTGCCAT CACTCCCTCA GTGTCCTACA ATGGCTCCTG GTGGCTTCTC
  R
  CCAGGAAGGA ACAGTTAAAC CCAAACACCA TGCTCTCTCT GCCAGTCAAG ATGAGACTGA
  CTCCCTCTTG CCAAATCCAG TCTGTTTTCT CATCTCTAGC CCCTTCTGTA TTCTGCGTCC
  TGCTTTCCCA CGCTATCCCC AGTCTGAAAT CCATCCATTA CTCTGTTGGG CTTTTCGTTT
  TGTTTGTTTG ATCACAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38010737	NES09400954	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27850711					SNP	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38010737	NES09400954	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59437011 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	878 bp proximal
Rr101075	regulatory region 101075	within coordinates
Susd1	sushi domain containing 1	within coordinates
Tssr37430	transcription start site region 37430	1142 bp upstream
Tssr41933	transcription start site region 41933	1279 bp downstream
Tssr41934	transcription start site region 41934	1334 bp downstream
Tssr41935	transcription start site region 41935	1639 bp downstream