rs27851897 SNP Detail

Summary

• ID
  rs27851897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:57922758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAA GGATTCCGCT GAGCACACAT
  R
  GGAAGACAAT GGCCGCATGC ACTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38016717	NES09409256	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		G	A	A	G		G	A		G
ss45680481	mCV24889906	ABI	CRAMUS_MOUSE	f	SNP		G	A					A		A
ss146389040	ENSMUSSNP1841892	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							A
ss321136031	CHEV_4_57935630	CHEVERUD	SCREENING_POP	f	SNP													G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27851897					SNP	G	G	A	A	A	A	A	A	G	A	A	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38016717	NES09409256	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57922758 () rs orientation: forward

Symbol	Name	Function Class
Gm42292	predicted gene, 42292	within coordinates
Gm52700	predicted gene, 52700	746 bp downstream
Rr94514	regulatory region 94514	within coordinates
Rr98485	regulatory region 98485	288 bp distal
Rr376550	regulatory region 376550	1278 bp downstream