rs27853001 SNP Detail

Summary

• ID
  rs27853001
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56599400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACATTTA TGAATGAATG
  AATGAATGAA TGAATGGGAA TTGTTACATT TTGTATAAGA ATGATGTCCT GTTTTCTGAG
  AAATTTCATG CTTAGACCTC ATCTCTTTTG TATACAAAGA TTTCCTGCAT CATGTCTCAT
  AGTGATCCAC ATCTGTCCAT AGCATCATTG TTACTACTAC TGAGCGCTGT ATTTTATACA
  S
  AACATAGCTC AAAACATGTA CATAGTAGCT CATGAACAAA GCATAAGCTG TTGTTCTATG
  TCTGTCCTGA TTAGCTTTTT GTCAGCCTGA CATAAGCTAG AATCATCTTG GAAGAGGAAT
  TCTCAACAGG GGAAAACAGA CAGACATGTT TCTTGACTGA CAGTTGATAA GAGAAGTCAG
  TGTCACCCCT GGGCAGACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38021935	NES09391393	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27853001					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021935	NES09391393	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56599400 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1006 bp distal