rs27853011 SNP Detail

Summary

• ID
  rs27853011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56597797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAATTCTG GGAAACAAAA
  TATGTACTTG TGTCCACCTA AAACAGGAAG GTGGTAAAAA GGTATAGGAA GACTCTAAGG
  ATCTGCTACA AGGTATGGAC ATCTGCTCAT GAGTACCAGT CAACTGCAAA CCAGAAAGAA
  ATAAAGAAGA CATCAGCTAT TGCAGGTGTG GGTTTTCTAC ATTAATGTTC CTATCTAGTG
  Y
  ACAATGAAAT ATCAAGGTCC CAAAGTTGTA TTCATATGCA AAGTTGTGCT CCAGTTAGCT
  AAAAAATAAT AAAAATAAAA TTGCTTCTTT CAGGTACCAA CCATGGCTAA AAGAATTCAT
  GGAAAATTCA GAAATTTAGA AATGCAGATA AGCTAATTGC AAGCTGTTAG TGAAGCTAAA
  TGACTAAGGA GATGGCTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38021946	NES09391431	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853011					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021946	NES09391431	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56597797 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	450 bp proximal