rs27853012 SNP Detail

Summary

• ID
  rs27853012
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56597720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTGAAA GTTGCACACG
  GTCATTCTGT TTGCATCCCA GTGACAAAAG TGAGTGGCAC TGACACATCT AGCTGCAAGG
  AATTCTGGGA AACAAAATAT GTACTTGTGT CCACCTAAAA CAGGAAGGTG GTAAAAAGGT
  ATAGGAAGAC TCTAAGGATC TGCTACAAGG TATGGACATC TGCTCATGAG TACCAGTCAA
  S
  TGCAAACCAG AAAGAAATAA AGAAGACATC AGCTATTGCA GGTGTGGGTT TTCTACATTA
  ATGTTCCTAT CTAGTGTACA ATGAAATATC AAGGTCCCAA AGTTGTATTC ATATGCAAAG
  TTGTGCTCCA GTTAGCTAAA AAATAATAAA AATAAAATTG CTTCTTTCAG GTACCAACCA
  TGGCTAAAAG AATTCATGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38021947	NES09391430	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853012					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021947	NES09391430	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56597720 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	527 bp proximal