rs27853018 SNP Detail

Summary

• ID
  rs27853018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56597088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGGAGC AAACCACATC
  CTCTGTCCCA TCCTCCAGGA AGTGCAACAG TGGGGATCCT GGGACTGTCT TTTGGCATTC
  TTCAATGTGG GCTGATGGCA CAAAACCAAG CCTCAGATCC GAGGAGAAAT TCTCCAAGGG
  ACCAGATCAA GACAGGCCAG GTGTACTATT CTCTGCTGGT CTTTTGAAAA CCACAGAGGA
  Y
  ATCTGAAGAT TCTAGGGGTT TCACAGAGAG ACCTTTATTC TTAGCGCCAT GAAATCTCTC
  TCTTCCACTA ACATCTCTAG TAAATAATCA GCAATAGCAA GCAAGAAGAG ACAAGCATTG
  TGGAAACAGT CAATGTTCTG GGACTAAACC TCCATCCAAT GACTTCGGTC AGATGTTTCA
  GAAAACGTCA TTTCAGCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38021953	NES09391510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853018					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021953	NES09391510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56597088 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1159 bp proximal