rs27853019 SNP Detail

Summary

• ID
  rs27853019
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56596938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTCCCAC AGAATTTGAG
  GTGGCTTTGA AAGACACAGA CAGTTACACA ACTTACAGTG TCCACAAAAA CAAAACAAGC
  CAGTTGCTCA GGAGAAGCAT AGCTATTCCT GGTACAAGGT CTGAACGCAA CTTCTCCCCT
  GGGTCTTCAC AAAGAGGAGC AAACCACATC CTCTGTCCCA TCCTCCAGGA AGTGCAACAG
  Y
  GGGGATCCTG GGACTGTCTT TTGGCATTCT TCAATGTGGG CTGATGGCAC AAAACCAAGC
  CTCAGATCCG AGGAGAAATT CTCCAAGGGA CCAGATCAAG ACAGGCCAGG TGTACTATTC
  TCTGCTGGTC TTTTGAAAAC CACAGAGGAT ATCTGAAGAT TCTAGGGGTT TCACAGAGAG
  ACCTTTATTC TTAGCGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38021954	NES09391508	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853019					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021954	NES09391508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56596938 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1309 bp proximal