rs27853021 SNP Detail

Summary

• ID
  rs27853021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56596712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTTAAA GAAAGTAAAT
  ATTACTGTCA GTTTCAGTCA TGGGTTGTGT TGCTTTAACT GTGAATGTGT TTGAATACGA
  ATTTTGAGTG CATCCGCAGG TAGAATTTAT TACCTCTAAC ATGCAAGAAA AGTAAAGGCA
  CACGGAGTGA CTGTTCCAAA AGCAATACAA TGAGTTAAAA AGGGAGCTTG GTCTTGGCCC
  Y
  GGATTGCTTT ATTTTATTCA CTGTCTGGTT CCCACAGAAT TTGAGGTGGC TTTGAAAGAC
  ACAGACAGTT ACACAACTTA CAGTGTCCAC AAAAACAAAA CAAGCCAGTT GCTCAGGAGA
  AGCATAGCTA TTCCTGGTAC AAGGTCTGAA CGCAACTTCT CCCCTGGGTC TTCACAAAGA
  GGAGCAAACC ACATCCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38021956	NES09391502	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27853021					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021956	NES09391502	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56596712 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1535 bp proximal