rs27853025 SNP Detail

Summary

• ID
  rs27853025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:56596317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTGTAT CCTCAGATGC
  TTTTCCCTGG GCTCTGAGCA GTATTGTCTC TCTTTATCCT GCAGGTCTCT GATCAAAAGA
  ATATCACATC CTTGAAGTTA CCTTCTATCT CCTCCTCCAT AACAACTGTG ACTCTCTCCC
  ACCACACCCT AGTCTCTTTC TTCATTGTGG TTTCAAATTT TTATAACAAG AGTATTTACC
  R
  TTTATTTACT TGTCGTTTCA GTGCCTCTTG TGGTAGAAAA CACATCCTTA ACCCTCTGTG
  CTACTTACGC GCACACTTAG TACAGTGTAT ATTTGCAGAA TGCTTCTCCG CCAATGTGTC
  CTCAAATTTG CCAAATGCAT GAATGAAGCA AAGATTGCGA AGGATGGTGA AAGAGGGGGA
  GTCACAAAAG AGCAGAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss38021961	NES09391493	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27853025					SNP	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38021961	NES09391493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:56596317 () rs orientation: forward

Symbol	Name	Function Class
D4Mit314	DNA Segment, Chr 4, Massachusetts Institute of Technology-314	1930 bp proximal