rs27857039 SNP Detail

Summary

• ID
  rs27857039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46406088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCACCATC CTCCTGTCCC
  AACTTCCTGA GTGCCAGGAT TGGGGATGTG TGTCACCGTG CTAGCTGAGA AAAAAGCTTT
  GAAACATTCT GAAAAGGATT GACAATGGCA CAGCAGACAC CTGAGTGCCC ACCACTAAAG
  GGTTTGCTAC CTTGGTAGCA AACAAGCAAG ATTTACACCT CCTTCTGTTC CTTACCTCTC
  Y
  ATCTTGCAAG TCAACTATGG AAAGTTCAGG TAGCTCCCAT GGGAGCTAGT CAGTGGGACC
  TCATGGAGAA GAAGTTTCTA ATATACCTCT TAAATGTTTT TGACTTTTAT ATAGAGGATT
  AAAGGCTTCA ACATAATCTT TGAAAATTAT GTTTTATAAT CTAGACCAGC ATTTTAAATG
  TTGTAAGCTC TTTGTTTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993074	NES09450937	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857039					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993074	NES09450937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46406088 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	1905 bp upstream
Rr591608	regulatory region 591608	1362 bp distal
Rr591609	regulatory region 591609	527 bp proximal
Tssr41570	transcription start site region 41570	1994 bp upstream
Tssr41571	transcription start site region 41571	1948 bp upstream
Tssr41572	transcription start site region 41572	1928 bp upstream
Tssr41573	transcription start site region 41573	1848 bp upstream
Tssr41574	transcription start site region 41574	1749 bp upstream