rs27857040 SNP Detail

Summary

• ID
  rs27857040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46405978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACATGCATT TCGTAGTTTA
  AACTATAACT TGATCTGCCA AACTCTACTT TCCTTCCTTA TTCTTGTTTG CTTGGGACAG
  GATCGCCTTA CACCGCCCAG GCCGACCTCA ACTCACCATC CTCCTGTCCC AACTTCCTGA
  GTGCCAGGAT TGGGGATGTG TGTCACCGTG CTAGCTGAGA AAAAAGCTTT GAAACATTCT
  R
  AAAAGGATTG ACAATGGCAC AGCAGACACC TGAGTGCCCA CCACTAAAGG GTTTGCTACC
  TTGGTAGCAA ACAAGCAAGA TTTACACCTC CTTCTGTTCC TTACCTCTCC ATCTTGCAAG
  TCAACTATGG AAAGTTCAGG TAGCTCCCAT GGGAGCTAGT CAGTGGGACC TCATGGAGAA
  GAAGTTTCTA ATATACCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993075	NES09450936	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857040					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993075	NES09450936	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46405978 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	1795 bp upstream
Rr591608	regulatory region 591608	1252 bp distal
Rr591609	regulatory region 591609	637 bp proximal
Tssr41567	transcription start site region 41567	1955 bp upstream
Tssr41568	transcription start site region 41568	1942 bp upstream
Tssr41569	transcription start site region 41569	1920 bp upstream
Tssr41570	transcription start site region 41570	1884 bp upstream
Tssr41571	transcription start site region 41571	1838 bp upstream
Tssr41572	transcription start site region 41572	1818 bp upstream
Tssr41573	transcription start site region 41573	1738 bp upstream
Tssr41574	transcription start site region 41574	1639 bp upstream