rs27857042 SNP Detail

Summary

• ID
  rs27857042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46405106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATAGGCA CAGGGGACCA
  TGGCTCAGCC AAGGAGGGAA CATGGAGGCC AAGGTCAGGA GACACAGGGC CCATTGTGTT
  CTGGAGACAG ACTGAGAGGG AAAAGGTTTG AGTTCCAGAG CCACCCTAGT TCAAGTTAGC
  CAGGAGCCAG ATCAGACCTG GAACATGGAG ACAGTAGCCT TGGCTTTGTG GATTCCCAGG
  R
  ACAGTCACAT CTACTCAGCC ATGCAAGACA TCTTCCATAT GCCCAGTACA TTGATCAATG
  GTACCTTTGG TATCCAACAT ACTGAACATC AATAAATGTT AGCTGCTTTA TTATTAATAA
  GGATATGGGT GCAGCACAGT GACACACACT GCTATTCTGC CACTTGGCAG GTACAGGCAG
  AAGGGTCAGG AGTTCAAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993077	NES09451034	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857042					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993077	NES09451034	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46405106 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	923 bp upstream
Tssr1165	transcription start site region 1165	1151 bp upstream
Tssr41567	transcription start site region 41567	1083 bp upstream
Tssr41568	transcription start site region 41568	1070 bp upstream
Tssr41569	transcription start site region 41569	1048 bp upstream
Tssr41570	transcription start site region 41570	1012 bp upstream
Tssr41571	transcription start site region 41571	966 bp upstream
Tssr41572	transcription start site region 41572	946 bp upstream
Tssr41573	transcription start site region 41573	866 bp upstream
Tssr41574	transcription start site region 41574	767 bp upstream