rs27857043 SNP Detail

Summary

• ID
  rs27857043
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46405095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGATTGAA GACAATAGGC
  ACAGGGGACC ATGGCTCAGC CAAGGAGGGA ACATGGAGGC CAAGGTCAGG AGACACAGGG
  CCCATTGTGT TCTGGAGACA GACTGAGAGG GAAAAGGTTT GAGTTCCAGA GCCACCCTAG
  TTCAAGTTAG CCAGGAGCCA GATCAGACCT GGAACATGGA GACAGTAGCC TTGGCTTTGT
  R
  GATTCCCAGG AACAGTCACA TCTACTCAGC CATGCAAGAC ATCTTCCATA TGCCCAGTAC
  ATTGATCAAT GGTACCTTTG GTATCCAACA TACTGAACAT CAATAAATGT TAGCTGCTTT
  ATTATTAATA AGGATATGGG TGCAGCACAG TGACACACAC TGCTATTCTG CCACTTGGCA
  GGTACAGGCA GAAGGGTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993078	NES09451033	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857043					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993078	NES09451033	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46405095 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	912 bp upstream
Tssr1165	transcription start site region 1165	1140 bp upstream
Tssr41567	transcription start site region 41567	1072 bp upstream
Tssr41568	transcription start site region 41568	1059 bp upstream
Tssr41569	transcription start site region 41569	1037 bp upstream
Tssr41570	transcription start site region 41570	1001 bp upstream
Tssr41571	transcription start site region 41571	955 bp upstream
Tssr41572	transcription start site region 41572	935 bp upstream
Tssr41573	transcription start site region 41573	855 bp upstream
Tssr41574	transcription start site region 41574	756 bp upstream