rs27857047 SNP Detail

Summary

• ID
  rs27857047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46404651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGCTCT GACCAACTCA
  GTGGCCCAGA GCAACCCACA TCCCTTTCCT GTGCCTCTAT TTGCAAAATG AGTGAACAGC
  CACTCTTGCC TGTTTCATAC ACTTCTTATG AAAGGGAAGC TTATAGAGTT AGCTATTGAT
  TACTCTTCCT AGGTAGGCTG TTGATTAATC TTCCTAGGTG TGGCTATGTT TTCACCATAA
  R
  CTGTTGCAAG TTATCAGCAA GCCTTGTTGT TATGACCCTA GAGTAGACAG TAGACGCATA
  GCCCTAACTA GGCTAACAAA GCTAATCTCC ACTGCTCACC AGTCAGAATA AATAGTGAAG
  CTCGCTGTTA ACAGACCCAG GGGTGGACAG GGTGGGGAAG AGCCTCTCTG AGGGAAAAGA
  CCTGGCATTA TGTTCCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993082	NES09451026	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857047					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993082	NES09451026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46404651 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	468 bp upstream
Rr591607	regulatory region 591607	1525 bp distal
Rr591608	regulatory region 591608	within coordinates
Rr591609	regulatory region 591609	1964 bp proximal
Tssr1165	transcription start site region 1165	696 bp upstream
Tssr41567	transcription start site region 41567	628 bp upstream
Tssr41568	transcription start site region 41568	615 bp upstream
Tssr41569	transcription start site region 41569	593 bp upstream
Tssr41570	transcription start site region 41570	557 bp upstream
Tssr41571	transcription start site region 41571	511 bp upstream
Tssr41572	transcription start site region 41572	491 bp upstream
Tssr41573	transcription start site region 41573	411 bp upstream
Tssr41574	transcription start site region 41574	312 bp upstream