rs27857048 SNP Detail

Summary

• ID
  rs27857048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46404423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCACTG GCCCTGTGAA
  GCTTCGAGCT CACTGTTTAT ACAGGGAACC CCCCCCCCCA TGACACAGTC TAGCGTGTGT
  AACCTCCCAC TCGGCAGCCA TGTAGGTCTG TGTGCCAGTG TATGCCTGGG TTCCTTTTTA
  GGACACCAAG TGGCTGTGCC ATTCCAGGCT GTGGCCAGGA TGGCTTTTTT CATGAATGGA
  R
  GTGGCCATGT ATAGGGAGAT CCCAGGGTTT AGGCTCTGAC CAACTCAGTG GCCCAGAGCA
  ACCCACATCC CTTTCCTGTG CCTCTATTTG CAAAATGAGT GAACAGCCAC TCTTGCCTGT
  TTCATACACT TCTTATGAAA GGGAAGCTTA TAGAGTTAGC TATTGATTAC TCTTCCTAGG
  TAGGCTGTTG ATTAATCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993083	NES09451089	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857048					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993083	NES09451089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46404423 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	240 bp upstream
Rr591607	regulatory region 591607	1297 bp distal
Rr591608	regulatory region 591608	within coordinates
Tssr1165	transcription start site region 1165	468 bp upstream
Tssr41567	transcription start site region 41567	400 bp upstream
Tssr41568	transcription start site region 41568	387 bp upstream
Tssr41569	transcription start site region 41569	365 bp upstream
Tssr41570	transcription start site region 41570	329 bp upstream
Tssr41571	transcription start site region 41571	283 bp upstream
Tssr41572	transcription start site region 41572	263 bp upstream
Tssr41573	transcription start site region 41573	183 bp upstream
Tssr41574	transcription start site region 41574	84 bp upstream