rs27857052 SNP Detail

Summary

• ID
  rs27857052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46404023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCCATG GATGCAGCCC
  GTTGCCCCTT TCGTCTGACC AGGACCCAAA CGACTAAAAA AGTAAATCTC CCCAGCAGCC
  CCCACTCCTT ACCTGGAGCA CAGGACTTCT GTGGGTGAGC TTCAGGCATC TGGGGGAGCT
  TCAGACGAGG TCGGCCCTTC CCCATGTCCA TCTTGCCACG ATGCCTTCTT GGTATTGGCT
  Y
  TGACTTCACA AGCAGCCTAA AAGCTTTTTG AAAATATCAA GACCAACACT TCAAAAGAAG
  ATGAAGAAAA AAAAAAGCCA CAGACACACA CATTCAAGTT TGCTTGTCAC TTCCCGCCTA
  AAAGTTTTAT CTGGTTAGAC CACAGCTGTG GGCAAATTCC ACTTTCTTTA TCACACTGCA
  CAGGTGTGAG GGGGAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993087	NES09451083	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857052					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993087	NES09451083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46404023 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	within coordinates
Tssr1165	transcription start site region 1165	68 bp upstream
Tssr41567	transcription start site region 41567	within coordinates
Tssr41568	transcription start site region 41568	4 bp downstream
Tssr41569	transcription start site region 41569	18 bp downstream
Tssr41570	transcription start site region 41570	45 bp downstream
Tssr41571	transcription start site region 41571	102 bp downstream
Tssr41572	transcription start site region 41572	126 bp downstream
Tssr41573	transcription start site region 41573	201 bp downstream
Tssr41574	transcription start site region 41574	307 bp downstream