rs27857057 SNP Detail

Summary

• ID
  rs27857057
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46403667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAGAAA AAGTCCATAG
  GTTCACTAGA AGCTAAAAGT TTTCAAACTG TGCCCTAGGA TAATTCAGAG CCCAGGGTTC
  CACATAGCAT TTTGAGAAAT GTTACTTTAG AATAGACCTT AAGGTAAATT AGAAGCCAAA
  AGAGTAAGCA TTTGGACATG TCAGACCCTA GTGGAGATCC CTGTTGCCAC ATCCTTCCCA
  R
  TGTCTCAGGC CGGGAGGAGC AGGACCCCTC TTGCCACAGC TGCTCAGCCC TGGGTGTCTC
  CACTGTTTCC CATTTCAGAG AATTTCTTAC TAACAATTTC TTTATTGCCC CTTGTGTTTC
  TCTAGACTGT TACGCAGCTC AGTGCGTCAG GCCCATCTTC CCATGGATGC AGCCCGTTGC
  CCCTTTCGTC TGACCAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37993092	NES09451065	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27857057					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993092	NES09451065	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46403667 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	within coordinates
Rr591607	regulatory region 591607	541 bp distal
Rr591608	regulatory region 591608	559 bp proximal
Tssr1165	transcription start site region 1165	283 bp downstream
Tssr41567	transcription start site region 41567	345 bp downstream
Tssr41568	transcription start site region 41568	360 bp downstream
Tssr41569	transcription start site region 41569	374 bp downstream
Tssr41570	transcription start site region 41570	401 bp downstream
Tssr41571	transcription start site region 41571	458 bp downstream
Tssr41572	transcription start site region 41572	482 bp downstream
Tssr41573	transcription start site region 41573	557 bp downstream
Tssr41574	transcription start site region 41574	663 bp downstream