rs27857060 SNP Detail

Summary

• ID
  rs27857060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46402446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATAATA TCAACTCAGC
  CCAGCATGAT GGAGTATACT TTAATCCCAG CACTCAGGAG ACAGAGGCAG GAGGATCTCT
  GAGTTCAAGG CTAGTCTGGT CTACAGAGTG AGTTCCAGAA CATCCAGGGC TACTCGGAGA
  AACCCTGTCT TAAAAGGCCA ATTATTATTA ATAATATCCA ACTAAAATAA GCATATTTAC
  R
  TAACTGATTT TATTCTTTTG GAGAGAGGAA TGGTAGACAG GGTCTCCCTC TGGTGCATCC
  CTGACTGACC TTGAATTCCT TAACCTAATA CTCTAGATGC TGGGATTAGA GGCATCCCAC
  CTTGCTCTAG TTATGCTTTT ATTTACTTAT TTATTTTTAT TTATATGAGT ACACCGTAGC
  TGTCTTCAGA CACACCAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37993095	NES09451152	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27857060					SNP	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993095	NES09451152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46402446 () rs orientation: forward

Symbol	Name	Function Class
Hemgn	hemogen	within coordinates
Rr591607	regulatory region 591607	within coordinates
Rr591608	regulatory region 591608	1780 bp proximal
Tssr1165	transcription start site region 1165	1504 bp downstream
Tssr41567	transcription start site region 41567	1566 bp downstream
Tssr41568	transcription start site region 41568	1581 bp downstream
Tssr41569	transcription start site region 41569	1595 bp downstream
Tssr41570	transcription start site region 41570	1622 bp downstream
Tssr41571	transcription start site region 41571	1679 bp downstream
Tssr41572	transcription start site region 41572	1703 bp downstream
Tssr41573	transcription start site region 41573	1778 bp downstream
Tssr41574	transcription start site region 41574	1884 bp downstream