rs27857098 SNP Detail

Summary

• ID
  rs27857098
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46391385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTCTAA ACCAACAAGA
  AAAAAGGAAT AATTTGATTC GCTCTGGAGT CTAGATATGA ATAGTAAGAA AATAATGAAT
  TTATAGGGAA TGGTAAAAGA AAATGAATGG TGGAGATGGT TCAGTGGGTA AGGAAGGCAC
  TTGCCATGCA AGTAAGGGAC TAGACTTTGG GTGCTCAGCC ACCATGTAAA TGCTGAGTGG
  K
  TGTAGCGACC TGCAGGAGGG AAGAACAGGT AAGCCCTGGA ACAAGCTGGC TAGTTAGACT
  ACCCCAAGTA GTGGGCTCTG GGTTCAGGTG AGAGCCCCTA TCTGACTATA TAAGCTGGAG
  AGCAATTGAG TAAGACAGAC ATCACCCTGT GGTTTCATAG GCTTGTACAT ACATGGGCAG
  CTATGAAGCC ACACACCAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37993137	NES09451948	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27857098					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993137	NES09451948	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46391385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	1514 bp distal
Gm69592	predicted gene, 69592	1010 bp downstream
Rr376425	regulatory region 376425	422 bp downstream
Rr591603	regulatory region 591603	1458 bp distal
Rr591604	regulatory region 591604	1894 bp distal
Rr591605	regulatory region 591605	731 bp distal
Rr591606	regulatory region 591606	231 bp distal
Trmo	tRNA methyltransferase O	1948 bp upstream
Tssr37118	transcription start site region 37118	1884 bp downstream
Tssr41565	transcription start site region 41565	1929 bp upstream