rs27857099 SNP Detail

Summary

• ID
  rs27857099
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46391208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGGGGAG ACAGAGGCAG
  GCAGATCTCC GAGTTGGAGG TAAGCCAGAG CTACGAACAC ACAATTTTTT TTTTTTTAAA
  GTCTTTAGGT GTAGCTCAGG TATACCCAGA ACCCTTCCTG CCACAAGAAG AGGGCAGCAC
  AAAGTGGAGA TTCTTAGAGG TTCTAATTCA TTACCTCAAA GCTCTAAACC AACAAGAAAA
  M
  AGGAATAATT TGATTCGCTC TGGAGTCTAG ATATGAATAG TAAGAAAATA ATGAATTTAT
  AGGGAATGGT AAAAGAAAAT GAATGGTGGA GATGGTTCAG TGGGTAAGGA AGGCACTTGC
  CATGCAAGTA AGGGACTAGA CTTTGGGTGC TCAGCCACCA TGTAAATGCT GAGTGGGTGT
  AGCGACCTGC AGGAGGGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993138	NES09451947	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857099					SNP	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993138	NES09451947	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46391208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	1337 bp distal
Gm69592	predicted gene, 69592	833 bp downstream
Rr376425	regulatory region 376425	245 bp downstream
Rr591600	regulatory region 591600	1999 bp distal
Rr591602	regulatory region 591602	1897 bp distal
Rr591603	regulatory region 591603	1281 bp distal
Rr591604	regulatory region 591604	1717 bp distal
Rr591605	regulatory region 591605	554 bp distal
Rr591606	regulatory region 591606	54 bp distal
Trmo	tRNA methyltransferase O	1771 bp upstream
Tssr37118	transcription start site region 37118	1707 bp downstream
Tssr41565	transcription start site region 41565	1752 bp upstream