rs27857103 SNP Detail

Summary

• ID
  rs27857103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46390721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTTTAC CCCCCTTTTT
  CTTGTAGAAG ATAGAGTTGT TGTCTAGCTG GAGAAACAAG TTTGTGTGCC TTTGGGCAAC
  ACGTACACGC TGTAAAAATG GGCTAAGCTG CAGTTGCCAC TAGTCGGCGC TGTTAATAAG
  ACAGTCAAAA GTGAAAGGGG CTTGCCCTCC ATCAAGATCT GCCACTCACT GCGTCTAATT
  Y
  CCAACTCTGC CAACCACTGA GACTCAAAAC CAAGTAGACT TGGAGATACT AGACCTAGGA
  ATCTGTCATT AAAAATAGCG GAGCAAAAGG AGCTGGAGCG ATGGCTCAGC AGTTCAAAGC
  ACCAGCCAAG TTTCCAGAGG ATTCAGGTTT GATTCTCAGT ACCCACGTAG TAGCTCGCAA
  CTTATGGTAA CTCCACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993142	NES09452003	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857103					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993142	NES09452003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46390721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	850 bp distal
Gm69592	predicted gene, 69592	346 bp downstream
Rr376425	regulatory region 376425	within coordinates
Rr591600	regulatory region 591600	1512 bp distal
Rr591601	regulatory region 591601	1686 bp distal
Rr591602	regulatory region 591602	1410 bp distal
Rr591603	regulatory region 591603	794 bp distal
Rr591604	regulatory region 591604	1230 bp distal
Rr591605	regulatory region 591605	67 bp distal
Rr591606	regulatory region 591606	207 bp proximal
Trmo	tRNA methyltransferase O	1284 bp upstream
Tssr37118	transcription start site region 37118	1220 bp downstream
Tssr41564	transcription start site region 41564	1598 bp upstream
Tssr41565	transcription start site region 41565	1265 bp upstream