rs27857105 SNP Detail

Summary

• ID
  rs27857105
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46390423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCAAAC TCTTTGCATA
  CATGATTATG TTTGGGGATT TCAAAATCTT GTTGGTTTCG AAGAGAGGGG GGAATCCACC
  TGACATTACC TGTAATATAA AATATTAAAA AATGCGAATC CACGGATTAA AGGCTTAACC
  GTGAAAAGCT GTTTCCAAGT GTTTGTTGTC ACTGACTAAA CAAGTCCCTA GTAGGAAATA
  R
  TCAGTATTAG GAGACAGGTT TTTGAGAGAA AGTTGTGAAT TCTTAAGTTA AAACTGATAC
  TGTGCCCTCT GTCAGTTTTG TCCATGAAAT TTCCAAAAGT TTTTTACCCC CCTTTTTCTT
  GTAGAAGATA GAGTTGTTGT CTAGCTGGAG AAACAAGTTT GTGTGCCTTT GGGCAACACG
  TACACGCTGT AAAAATGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993144	NES09452001	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857105					SNP	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993144	NES09452001	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46390423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	552 bp distal
Gm69592	predicted gene, 69592	48 bp downstream
Rr376425	regulatory region 376425	within coordinates
Rr591600	regulatory region 591600	1214 bp distal
Rr591601	regulatory region 591601	1388 bp distal
Rr591602	regulatory region 591602	1112 bp distal
Rr591603	regulatory region 591603	496 bp distal
Rr591604	regulatory region 591604	932 bp distal
Rr591605	regulatory region 591605	210 bp proximal
Rr591606	regulatory region 591606	505 bp proximal
Trmo	tRNA methyltransferase O	986 bp upstream
Tssr37118	transcription start site region 37118	922 bp downstream
Tssr41564	transcription start site region 41564	1300 bp upstream
Tssr41565	transcription start site region 41565	967 bp upstream