rs27857108 SNP Detail

Summary

• ID
  rs27857108
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46390105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCGGCCC AAGAGCTGGA
  CGTTAAATGT TTAAAATTTC CCTTGGACGT GGGCATACGT GTTATATTTA TCACTCCCCT
  CCACTTTTTA AGTAATAACT ATTTGTCGGA AAAGGGCAAG AAAATCAAGA ATGGTAGGTG
  TTACAAGCAA GCTAGGCTAG AAGTTATTAA GTGAGAACGT TTGTGCTCCA AACCACTGGA
  M
  CCGAAATAAG GATGAAGAGC CAGCAAAAAC CGTATTTTCT CTCCCTGCTC CAATTGCCTG
  CTCTTTAGCC ACTTGTAAGA TTCTTTAACC GCCCCTCCCC CCCAAAAAAA GATTCTTTAA
  CCCAAACTCT TTGCATACAT GATTATGTTT GGGGATTTCA AAATCTTGTT GGTTTCGAAG
  AGAGGGGGGA ATCCACCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993147	NES09451998	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857108					SNP	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993147	NES09451998	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46390105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	234 bp distal
Gm69592	predicted gene, 69592	within coordinates
Rr376425	regulatory region 376425	within coordinates
Rr591600	regulatory region 591600	896 bp distal
Rr591601	regulatory region 591601	1070 bp distal
Rr591602	regulatory region 591602	794 bp distal
Rr591603	regulatory region 591603	178 bp distal
Rr591604	regulatory region 591604	614 bp distal
Rr591605	regulatory region 591605	528 bp proximal
Rr591606	regulatory region 591606	823 bp proximal
Trmo	tRNA methyltransferase O	668 bp upstream
Tssr37118	transcription start site region 37118	604 bp downstream
Tssr41564	transcription start site region 41564	982 bp upstream
Tssr41565	transcription start site region 41565	649 bp upstream