rs27857109 SNP Detail

Summary

• ID
  rs27857109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46389944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAACTGG AGTTTGGGAC
  TTTTTTTTTT CCATTTATTG TGTGCGCGGG AGCATGTCAA AGTCAAATGA CAAAATGCCG
  GAGCCGATAC TCCTCATGGC CGCGTAGCTC CCAGGATCAA AGTCAGGTCG TGTTAGCCGG
  TTCCTTTACT CGCTGAGCCA ACTAGCGGCC CAAGAGCTGG ACGTTAAATG TTTAAAATTT
  Y
  CCTTGGACGT GGGCATACGT GTTATATTTA TCACTCCCCT CCACTTTTTA AGTAATAACT
  ATTTGTCGGA AAAGGGCAAG AAAATCAAGA ATGGTAGGTG TTACAAGCAA GCTAGGCTAG
  AAGTTATTAA GTGAGAACGT TTGTGCTCCA AACCACTGGA ACCGAAATAA GGATGAAGAG
  CCAGCAAAAA CCGTATTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993148	NES09451997	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857109					SNP	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993148	NES09451997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46389944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	73 bp distal
Gm69592	predicted gene, 69592	within coordinates
Rr376425	regulatory region 376425	within coordinates
Rr591600	regulatory region 591600	735 bp distal
Rr591601	regulatory region 591601	909 bp distal
Rr591602	regulatory region 591602	633 bp distal
Rr591603	regulatory region 591603	17 bp distal
Rr591604	regulatory region 591604	453 bp distal
Rr591605	regulatory region 591605	689 bp proximal
Rr591606	regulatory region 591606	984 bp proximal
Trmo	tRNA methyltransferase O	507 bp upstream
Tssr37118	transcription start site region 37118	443 bp downstream
Tssr41564	transcription start site region 41564	821 bp upstream
Tssr41565	transcription start site region 41565	488 bp upstream