rs27857110 SNP Detail

Summary

• ID
  rs27857110
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:46389755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCATCATT CACCCACCAC
  GCGGCGATGG CGGCCTCGCG ACAGCCTGCA CCATACCCTC CGAAGGTGGG ACATGTGGAT
  AAAGATGTAC ACGCAAAGAT ACCCTTGAAT TATAAGCGGC CTCGGTGACC AAAAATAACC
  TTGAGTTTAA AGGGAAAGGA TGTGAATGTC CATCTATGAT CACATAGCAA AAGAACTGGA
  R
  TTTGGGACTT TTTTTTTTCC ATTTATTGTG TGCGCGGGAG CATGTCAAAG TCAAATGACA
  AAATGCCGGA GCCGATACTC CTCATGGCCG CGTAGCTCCC AGGATCAAAG TCAGGTCGTG
  TTAGCCGGTT CCTTTACTCG CTGAGCCAAC TAGCGGCCCA AGAGCTGGAC GTTAAATGTT
  TAAAATTTCC CTTGGACGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993149	NES09452086	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857110					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993149	NES09452086	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46389755 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14256	CpG island 14256			within coordinates
Gm69592	predicted gene, 69592			within coordinates
Rr376425	regulatory region 376425			within coordinates
Rr591600	regulatory region 591600			546 bp distal
Rr591601	regulatory region 591601			720 bp distal
Rr591602	regulatory region 591602			444 bp distal
Rr591603	regulatory region 591603			within coordinates
Rr591604	regulatory region 591604			264 bp distal
Rr591605	regulatory region 591605			878 bp proximal
Rr591606	regulatory region 591606			1173 bp proximal
Trmo	tRNA methyltransferase O			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr37118	transcription start site region 37118			254 bp downstream
Tssr41564	transcription start site region 41564			632 bp upstream
Tssr41565	transcription start site region 41565			299 bp upstream