rs27857112 SNP Detail

Summary

• ID
  rs27857112
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46389554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCGTAGC ACACGAGCCC
  TGCTTCTCCA AGCCGCGCAT GGTTACAGGC CGCTGAGTCG TCCGCGCGCC CAACGCTGAT
  TTCCGCTTCC GCGCGTTAGG CTTTGGCGCC TGCGCAGTTG TCGCTAGGTG CCGGGTCTTG
  GAGAACGCGC TCAATGGCGG CCGAGCTGCC GCGTGGAGGG TGGGTTCCCG GACGCCGTGA
  R
  GCCCATCATT CACCCACCAC GCGGCGATGG CGGCCTCGCG ACAGCCTGCA CCATACCCTC
  CGAAGGTGGG ACATGTGGAT AAAGATGTAC ACGCAAAGAT ACCCTTGAAT TATAAGCGGC
  CTCGGTGACC AAAAATAACC TTGAGTTTAA AGGGAAAGGA TGTGAATGTC CATCTATGAT
  CACATAGCAA AAGAACTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993151	NES09452084	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857112					SNP	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993151	NES09452084	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46389554 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	within coordinates
Gm69592	predicted gene, 69592	within coordinates
Rr376425	regulatory region 376425	within coordinates
Rr591600	regulatory region 591600	345 bp distal
Rr591601	regulatory region 591601	519 bp distal
Rr591602	regulatory region 591602	243 bp distal
Rr591603	regulatory region 591603	within coordinates
Rr591604	regulatory region 591604	63 bp distal
Rr591605	regulatory region 591605	1079 bp proximal
Rr591606	regulatory region 591606	1374 bp proximal
Trmo	tRNA methyltransferase O	117 bp upstream
Tssr37118	transcription start site region 37118	53 bp downstream
Tssr41564	transcription start site region 41564	431 bp upstream
Tssr41565	transcription start site region 41565	98 bp upstream