rs27857115 SNP Detail

Summary

• ID
  rs27857115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:46389321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGACCA CACCCCGTGT
  ACCAAGATCC TAATACGTCA CTCCCGTTAG CCTTAGCATG TCACGTGGTC GTCGAGACAC
  GTGACCCTTA CTTTGGCGGC AAGGACAAGA ATGTACGTCA GGTGGCTCGC GTTCTTCTGG
  CCAGGGAAGC GGGCCGCCTA GCTTAGGGTG CGGCGCCACC TTTTTCCATA ACGTTACCTG
  Y
  CTCCAGGGCC GGCTGAACGC ACCCACATGG GGCCGCCGTA GCACACGAGC CCTGCTTCTC
  CAAGCCGCGC ATGGTTACAG GCCGCTGAGT CGTCCGCGCG CCCAACGCTG ATTTCCGCTT
  CCGCGCGTTA GGCTTTGGCG CCTGCGCAGT TGTCGCTAGG TGCCGGGTCT TGGAGAACGC
  GCTCAATGGC GGCCGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993154	NES09452079	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857115					SNP	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993154	NES09452079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46389321 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14256	CpG island 14256			within coordinates
Gm69592	predicted gene, 69592			within coordinates
Rr376425	regulatory region 376425			within coordinates
Rr591600	regulatory region 591600			112 bp distal
Rr591601	regulatory region 591601			286 bp distal
Rr591602	regulatory region 591602			10 bp distal
Rr591603	regulatory region 591603			92 bp proximal
Rr591604	regulatory region 591604			149 bp proximal
Rr591605	regulatory region 591605			1312 bp proximal
Rr591606	regulatory region 591606			1607 bp proximal
Trmo	tRNA methyltransferase O			Coding-NonSynonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Tssr37118	transcription start site region 37118			140 bp upstream
Tssr41564	transcription start site region 41564			198 bp upstream
Tssr41565	transcription start site region 41565			70 bp downstream