rs27857117 SNP Detail

Summary

• ID
  rs27857117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46389209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTTGGAC CAAATGAGGG
  CATCAGTCAC ACACATCCCA CCTTCCTGTA ACCCCCTACG GAAAAAGACC ACACTACACA
  CGTGGCCGAC GCAGCTACTG TACTGAAACT AAGCCCAGAC CACACCCCGT GTACCAAGAT
  CCTAATACGT CACTCCCGTT AGCCTTAGCA TGTCACGTGG TCGTCGAGAC ACGTGACCCT
  Y
  ACTTTGGCGG CAAGGACAAG AATGTACGTC AGGTGGCTCG CGTTCTTCTG GCCAGGGAAG
  CGGGCCGCCT AGCTTAGGGT GCGGCGCCAC CTTTTTCCAT AACGTTACCT GCCTCCAGGG
  CCGGCTGAAC GCACCCACAT GGGGCCGCCG TAGCACACGA GCCCTGCTTC TCCAAGCCGC
  GCATGGTTAC AGGCCGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993156	NES09452075	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857117					SNP	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993156	NES09452075	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46389209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	within coordinates
Gm69592	predicted gene, 69592	within coordinates
Rr376425	regulatory region 376425	within coordinates
Rr591600	regulatory region 591600	within coordinates
Rr591601	regulatory region 591601	174 bp distal
Rr591602	regulatory region 591602	81 bp proximal
Rr591603	regulatory region 591603	204 bp proximal
Rr591604	regulatory region 591604	261 bp proximal
Rr591605	regulatory region 591605	1424 bp proximal
Rr591606	regulatory region 591606	1719 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr37118	transcription start site region 37118	252 bp upstream
Tssr41564	transcription start site region 41564	86 bp upstream
Tssr41565	transcription start site region 41565	182 bp downstream