rs27857120 SNP Detail

Summary

• ID
  rs27857120
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46388385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTGAGTTG GAGGTAAGCC AGAGCTACGA ACACACAATT
  TTTTTTTTTT TAAAGTCTTT AGGTGTAGCT CAGGTATACC CAGAACCCTT CCTGCCACAA
  R
  AAGAGGGCAG CACAAAGTGG AGATTCTTAG AGGTTCTAAT TCATTACCTC AAAGCTCTAA
  ACCAACAAGA GGACAGCCTG GTCTACAGAG TGAGCACAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993159	NES09452112	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857120					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993159	NES09452112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46388385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	610 bp proximal
Gm69592	predicted gene, 69592	814 bp upstream
Rr376425	regulatory region 376425	237 bp upstream
Rr591600	regulatory region 591600	324 bp proximal
Rr591601	regulatory region 591601	629 bp proximal
Rr591602	regulatory region 591602	905 bp proximal
Rr591603	regulatory region 591603	1028 bp proximal
Rr591604	regulatory region 591604	1085 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr37118	transcription start site region 37118	1076 bp upstream
Tssr41564	transcription start site region 41564	718 bp downstream
Tssr41565	transcription start site region 41565	1006 bp downstream