rs27857121 SNP Detail

Summary

• ID
  rs27857121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46388362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGTAAGA TCTAGCACTA
  ACTCTCACAA TATGTTTCCT TGCTTTTTGC TTATACAAAC TCTTTTTACT GTTGTGATGT
  ATTAGACCTA TTTTAAATCC TTGGGAGACA GAGGCAGGCA GATCCCTGAG TTGGAGGTAA
  GCCAGAGCTA CGAACACACA ATTTTTTTTT TTTTAAAGTC TTTAGGTGTA GCTCAGGTAT
  R
  CCCAGAACCC TTCCTGCCAC AAGAAGAGGG CAGCACAAAG TGGAGATTCT TAGAGGTTCT
  AATTCATTAC CTCAAAGCTC TAAACCAACA AGAGGACAGC CTGGTCTACA GAGTGAGCAC
  AGGCCAGCCG GGGCTTCACA GAAAAATCCT GTCTCCAGGG TAGGAGTGTG GAGACAAAAA
  TACTCTTATA CAGAGGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37993160	NES09452110	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27857121					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993160	NES09452110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46388362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	633 bp proximal
Gm69592	predicted gene, 69592	837 bp upstream
Rr376425	regulatory region 376425	260 bp upstream
Rr591600	regulatory region 591600	347 bp proximal
Rr591601	regulatory region 591601	652 bp proximal
Rr591602	regulatory region 591602	928 bp proximal
Rr591603	regulatory region 591603	1051 bp proximal
Rr591604	regulatory region 591604	1108 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr37118	transcription start site region 37118	1099 bp upstream
Tssr41564	transcription start site region 41564	741 bp downstream
Tssr41565	transcription start site region 41565	1029 bp downstream