rs27857123 SNP Detail

Summary

• ID
  rs27857123
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46387625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCACAA ATTGAATATG
  GGAATCCATA CATAATCCAT ATATATAGAC GAGGGTGGTA TAGCTGACAA ACCTCAAAGC
  TGCCTTCATT TGTCACACTC TCTCAGGGCC CGAGCTGCCA CTTCTAACCA GAAAACGACT
  TACCAAACAT GAGAAAACTC TTCTAGGCCC ATCAAGGAAT GCTCAGGGTT ATTAAAGATG
  Y
  TCTTTCTGAT CTTCAAACAG GCTCTGGAGT GGCTACAGAT GGATGGCTGC CTTGGAGTGC
  CAATCTTGGC TGGGAAACAT GATTCCAAGT ACCCTATTGG CTCAGTTAAA AGATTCCCTA
  TGGAAGAAAA CTGGATGAGA ATCATTACTC AAAGGGTCCA AGAGGTAAGA AAACATGTTT
  TCCTCTCAGT ATTGACTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993162	NES09452200	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857123					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993162	NES09452200	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46387625 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	1370 bp proximal
Gm69592	predicted gene, 69592	1574 bp upstream
Rr376425	regulatory region 376425	997 bp upstream
Rr591600	regulatory region 591600	1084 bp proximal
Rr591601	regulatory region 591601	1389 bp proximal
Rr591602	regulatory region 591602	1665 bp proximal
Rr591603	regulatory region 591603	1788 bp proximal
Rr591604	regulatory region 591604	1845 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr37118	transcription start site region 37118	1836 bp upstream
Tssr41564	transcription start site region 41564	1478 bp downstream
Tssr41565	transcription start site region 41565	1766 bp downstream