rs27857124 SNP Detail

Summary

• ID
  rs27857124
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46387378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTACAGT CGGCACAGCT
  GTGATCCCAT AAATGTATAA TGTAAGCAAT AGACCATGTG TCGTCCACAG ACCACAGTCT
  GCTGAGTCTT GTTCTAGAGA CCAGCATAAT GACCCACAGG CAGAATCAAG GAGGTGTTTA
  GTTAAAGCTA AACAGAAGAG AGACGTCATA ATTAAAACAA GCAGTATTAA AACATGTTCC
  R
  TCAGTGAATC ACAAATTCCT AATGGTGTCC AAGTATGCAA ACAATCAAAT GCACAAATTG
  AATATGGGAA TCCATACATA ATCCATATAT ATAGACGAGG GTGGTATAGC TGACAAACCT
  CAAAGCTGCC TTCATTTGTC ACACTCTCTC AGGGCCCGAG CTGCCACTTC TAACCAGAAA
  ACGACTTACC AAACATGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993163	NES09452199	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857124					SNP	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993163	NES09452199	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46387378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	1617 bp proximal
Gm69592	predicted gene, 69592	1821 bp upstream
Rr376425	regulatory region 376425	1244 bp upstream
Rr591600	regulatory region 591600	1331 bp proximal
Rr591601	regulatory region 591601	1636 bp proximal
Rr591602	regulatory region 591602	1912 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr41564	transcription start site region 41564	1725 bp downstream