rs27857125 SNP Detail

Summary

• ID
  rs27857125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:46387341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCAATA GGTATGCCAC
  AGAAAATACA CAGAATGCTG CTACAGTCGG CACAGCTGTG ATCCCATAAA TGTATAATGT
  AAGCAATAGA CCATGTGTCG TCCACAGACC ACAGTCTGCT GAGTCTTGTT CTAGAGACCA
  GCATAATGAC CCACAGGCAG AATCAAGGAG GTGTTTAGTT AAAGCTAAAC AGAAGAGAGA
  Y
  GTCATAATTA AAACAAGCAG TATTAAAACA TGTTCCGTCA GTGAATCACA AATTCCTAAT
  GGTGTCCAAG TATGCAAACA ATCAAATGCA CAAATTGAAT ATGGGAATCC ATACATAATC
  CATATATATA GACGAGGGTG GTATAGCTGA CAAACCTCAA AGCTGCCTTC ATTTGTCACA
  CTCTCTCAGG GCCCGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37993164	NES09452198	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27857125					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37993164	NES09452198	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:46387341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14256	CpG island 14256	1654 bp proximal
Gm69592	predicted gene, 69592	1858 bp upstream
Rr376425	regulatory region 376425	1281 bp upstream
Rr591600	regulatory region 591600	1368 bp proximal
Rr591601	regulatory region 591601	1673 bp proximal
Rr591602	regulatory region 591602	1949 bp proximal
Trmo	tRNA methyltransferase O	within coordinates
Tssr41564	transcription start site region 41564	1762 bp downstream