rs27860213 SNP Detail

Summary

• ID
  rs27860213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68720596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATAGCAAT TAAAAAGCAC
  TTTTCTGCAA AATGTCATTA CTGTTTAAAG TTACACAACC ATTTCTACGG CAGCGGAGGT
  TCACACAGCA GTCACAGCTA GAGTTGTCTC CCAGTGACCT GTGTCCAACA AAGAGAGCCA
  TTGCTGACCC CCTAGATTGG TGCCCAAGTC CTGCTAGCTT CAATGGGAGT CATAAATAAT
  Y
  TGGAGGGGGA TTTGGCCAGT GGAAGCACTT TTTGAAAGAT ATACAGCTGC CGGCTGGGGT
  GGAATATTCT ATCTCCTTGG TTCCCAAAAC ACCCCCTCTC CAATATGCAC ACACACACAC
  ACACACACAC ACACACACAC ACACACACAG AGAGGAGGTA GTAAGAATGA GGGAGAGAAA
  AATAAAATGA AGAGGGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38034944	NES09375093	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T		T	C	C	T		T
ss321155292	CHEV_4_68463393	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27860213					SNP	C	C	C	C	C	T	C	C	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034944	NES09375093	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68720596 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	729 bp upstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates
D4Mit346	DNA Segment, Chr 4, Massachusetts Institute of Technology 346	75 bp proximal
Rr593817	regulatory region 593817	125 bp distal