rs27860218 SNP Detail

Summary

• ID
  rs27860218
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68718875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTCTTG AATCCTGCTA
  AATCTAGATT TTCTGGAAAA TGGGTCCTTG CTTTTACTCT CCTTTTAGTT TATATTTTTC
  AGTTATGTTT ACAGACTCGT TTTTTTTCTT TTTTCATATT ACATATAATG TATATGACAA
  TTATGGTTGT ATAAACAATG AATTTCTATT CTGGTTCTAT ATGGAAACTA TAAAGTAGAA
  K
  TTTCTGACTG CTCCAGTAGA AACAGACCTG AATGTGTCTC AGCATGACTA TGGCAGGAAG
  CCATAGCCTA CATGAAAAGT TGGCCATTGC TACCACTGAG TTCCATACCA AAATCATCCC
  AACAAACTTA TTCATCCTCT CTCTAAAACT TCACTTTCTC AAATTATGTT CAAATGGAGA
  TAGTTGCACT AACTACATTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38034949	NES09375186	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	T	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27860218					SNP	G	G	G	G	T	G	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034949	NES09375186	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68718875 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	within coordinates
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates
D4Mit346	DNA Segment, Chr 4, Massachusetts Institute of Technology 346	1796 bp proximal
Rr593817	regulatory region 593817	1375 bp proximal