rs27860219 SNP Detail

Summary

• ID
  rs27860219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68718735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGTCCC CCTTGCTTTG
  CAGAGGATGC TAATTAGTTT TAGACTTCAA CATACAGAGT TATAGTTTTA CCTCTCACTA
  TGTAAAAAGG GGGTTGGATG CTTATTTAGA TTTTTATCTG TTTCTCACTT GGGCTTCTGG
  AGTACTCTTG AATCCTGCTA AATCTAGATT TTCTGGAAAA TGGGTCCTTG CTTTTACTCT
  Y
  CTTTTAGTTT ATATTTTTCA GTTATGTTTA CAGACTCGTT TTTTTTCTTT TTTCATATTA
  CATATAATGT ATATGACAAT TATGGTTGTA TAAACAATGA ATTTCTATTC TGGTTCTATA
  TGGAAACTAT AAAGTAGAAG TTTCTGACTG CTCCAGTAGA AACAGACCTG AATGTGTCTC
  AGCATGACTA TGGCAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38034950	NES09375179	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27860219					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034950	NES09375179	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68718735 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	54 bp downstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates
D4Mit346	DNA Segment, Chr 4, Massachusetts Institute of Technology 346	1936 bp proximal
Rr593817	regulatory region 593817	1515 bp proximal