rs27860220 SNP Detail

Summary

• ID
  rs27860220
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68718614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATTGAA TGGGGTTTAT
  CTGGGCTAAA GCTGCAAGTT GGTACCTAGA AGCATGAGCC AAGTACATGC TTAAGCCTAC
  AGTAGCCAGA AAGGCAAATC TGGACTAACA AATCATGTCT AAGATAGTCC CCCTTGCTTT
  GCAGAGGATG CTAATTAGTT TTAGACTTCA ACATACAGAG TTATAGTTTT ACCTCTCACT
  W
  TGTAAAAAGG GGGTTGGATG CTTATTTAGA TTTTTATCTG TTTCTCACTT GGGCTTCTGG
  AGTACTCTTG AATCCTGCTA AATCTAGATT TTCTGGAAAA TGGGTCCTTG CTTTTACTCT
  CCTTTTAGTT TATATTTTTC AGTTATGTTT ACAGACTCGT TTTTTTTCTT TTTTCATATT
  ACATATAATG TATATGACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38034951	NES09375177	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	A	A	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27860220					SNP	A	A	A	T	A	A	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034951	NES09375177	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68718614 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	175 bp downstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates
Rr593817	regulatory region 593817	1636 bp proximal