rs27860221 SNP Detail

Summary

• ID
  rs27860221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68718428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAACTAAA ACATTTGTGA
  AAAAGAACAT CACAGACACT AATTTTCTCC TGCTTGCTCT AAAAATGAAG GCACAAAGGG
  ACACTAAGAC AAAGAGACTA ACCCATGGGT ATAGGAAGAG AACCCTTGAC TACATCTTCT
  GATCTTCTTC TATATTTGAA TAATCACACT CTTAATCCTT AGAGTGGAAG ATTGAATGGG
  R
  TTTATCTGGG CTAAAGCTGC AAGTTGGTAC CTAGAAGCAT GAGCCAAGTA CATGCTTAAG
  CCTACAGTAG CCAGAAAGGC AAATCTGGAC TAACAAATCA TGTCTAAGAT AGTCCCCCTT
  GCTTTGCAGA GGATGCTAAT TAGTTTTAGA CTTCAACATA CAGAGTTATA GTTTTACCTC
  TCACTATGTA AAAAGGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38034952	NES09375174	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	A	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27860221					SNP	G	G	G	G	A	G	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034952	NES09375174	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68718428 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	361 bp downstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates
Rr593817	regulatory region 593817	1822 bp proximal