rs27860223 SNP Detail

Summary

• ID
  rs27860223
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68718094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGTTGC AAGGTCAGCT
  TTCCACAGGA TAAAGAATTT GGGCTTGTTG GAAGGTACGT AAGAGATAAC CATGGTTAAA
  AGGATAATAG AATGGGCAAA GGTAGGGGAA GTGTGTCTGG GAAGTCCAAC TGCATGAAAC
  AAACTCCAAT GGATAGGGCT ATGGTGTAGT AGAAAAACTG ACTAAGAGAG CTACAGAGGC
  M
  AGAAGGCCAG GAGGAATTTA TTATGCATTA CAGTTCATGT GTTTACCATA TGGATCAGGG
  AACACATATT AGTAGTTTTT CAAGAGCAAT AGTGATATAA TTAAAGGGAA ATGTTGAATA
  AGTGCATATA CGATTAAACT AAAACATTTG TGAAAAAGAA CATCACAGAC ACTAATTTTC
  TCCTGCTTGC TCTAAAAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38034954	NES09375168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	A	C	C	C	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27860223					SNP	C	C	C	A	C	A	C	C	C	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034954	NES09375168	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68718094 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	695 bp downstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates