rs27860227 SNP Detail

Summary

• ID
  rs27860227
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:68717354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGACCT GGTTAGAAAT
  AGCAAGAAGG GAAAATCAGA AAGGATAAAA AGGTGTTTTA TTAACAGCCT CCAAAGGTGA
  CAAGAATCTG GCCCTGTAAG GCTTCTCCCT GTGCACTGGA ATAAAAATAT AGATTCTTAG
  ATATAGATGG GCAGCAAAAT GTGGAGCCTT CAGTTGCATC GCTTATACTT CACTGTCTTC
  S
  GCCATGACCT TGGTTCTCTT GGAAATGCAG ACATTGCTCT GTTATATTAG TAATGAGTCA
  GGAGATGCTC TAATGTACAT TTTCTTCTAT TTGGAGAGAA AACCATTATT GAATGCATAA
  CATCATTATT TACCTTTCTT ATATCCTTCA TTTATTTTCT TTTCATTTAT TGAAATATTT
  ATGAACTCTA TTTATGAACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38034958	NES09375221	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27860227					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38034958	NES09375221	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:68717354 () rs orientation: forward

Symbol	Name	Function Class
9330154F10Rik	RIKEN cDNA 9330154F10 gene	1435 bp downstream
Brinp1	bone morphogenic protein/retinoic acid inducible neural specific 1	within coordinates