rs27862296 SNP Detail

Summary

• ID
  rs27862296
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45321073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTCTTTG GGAGCACACT
  AACAGCTATG TGAGAAACTG TTAAATCCAA AACCCACAAT GTGCAAGAAC TTAAGAACTT
  ACAGTTTTCT GACTTTGGGG TTATCTGTGA AACCAGCGTT TCTCTGTCGG CATCTTCAAT
  GAGTAATTGA TTCAGTTCTC CAACAGCACT GAAGGCCTTG GCATTGACTG AGATCAGTTG
  Y
  TTGATGCTTT GCTGCCAACT CGAGTTTATA GATTTTTTTT TTAGGGAAGG GGCATCACAA
  TTCCTGCAAA TTTGGTAAAA TGCTGGCAAG CCATTTAATC CCTGGATATA AGGGACAACT
  GAAATACAAG TGCCCCAGCC AAGTTGTTAA TTAGTGCTAT TGAAAGACTG AGAGTAAGAC
  TCCGAGGTAG GCAGATAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998229	NES09442924	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862296					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998229	NES09442924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45321073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	208 bp distal
Exosc3	exosome component 3	457 bp upstream
Gm68922	predicted gene, 68922	within coordinates
Tssr37060	transcription start site region 37060	690 bp downstream
Tssr37061	transcription start site region 37061	676 bp downstream
Tssr37062	transcription start site region 37062	644 bp downstream
Tssr41531	transcription start site region 41531	790 bp upstream
Tssr41532	transcription start site region 41532	635 bp upstream
Tssr41533	transcription start site region 41533	600 bp upstream
Tssr41534	transcription start site region 41534	439 bp upstream