rs27862297 SNP Detail

Summary

• ID
  rs27862297
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45320947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGCTTC ACGGTACCTA
  ATGTAACAAT CTCCCACCTC CTCCCACACA CATCACACCT TTTCACCTAC TTGAGTTCAT
  CTCTTCAGTG GCTTGGGAAC ATCGGTAACT CAGGAATTCT CCCAGCTACT TCTTTGGGAG
  CACACTAACA GCTATGTGAG AAACTGTTAA ATCCAAAACC CACAATGTGC AAGAACTTAA
  S
  AACTTACAGT TTTCTGACTT TGGGGTTATC TGTGAAACCA GCGTTTCTCT GTCGGCATCT
  TCAATGAGTA ATTGATTCAG TTCTCCAACA GCACTGAAGG CCTTGGCATT GACTGAGATC
  AGTTGCTTGA TGCTTTGCTG CCAACTCGAG TTTATAGATT TTTTTTTTAG GGAAGGGGCA
  TCACAATTCC TGCAAATTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998230	NES09442921	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862297					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998230	NES09442921	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45320947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	82 bp distal
Exosc3	exosome component 3	331 bp upstream
Gm68922	predicted gene, 68922	within coordinates
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	564 bp downstream
Tssr37061	transcription start site region 37061	550 bp downstream
Tssr37062	transcription start site region 37062	518 bp downstream
Tssr41531	transcription start site region 41531	664 bp upstream
Tssr41532	transcription start site region 41532	509 bp upstream
Tssr41533	transcription start site region 41533	474 bp upstream
Tssr41534	transcription start site region 41534	313 bp upstream