rs27862300 SNP Detail

Summary

• ID
  rs27862300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45320334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCCTATT GTGGTTCCTC
  TAAAGAAGAT GCAGAGAGGG GGCTAGAAGC CACCGCGGCT CTAGATTCGC CTTAACCTAT
  GATCGCTTGC AGGGGGCCCA CTTTCGCGGC AGCGCCGCCT CTCCGACATC CGCTCACCCG
  CTTCTGCTGC GAGTCCACCC AGTAAACGCC GCCGCCGCCT CCGCTGGGCT CCTTGTGACG
  Y
  AGGCGGCCAC ACTTGGTGAC CAGCAGACGG TCCCCGCAGC GTCGCAAACC TGGGCCACAC
  ACTACGCGCA GCCTCGGGCG CGCACCCGCA TTCAGGCGTA ACGGCTGCTC CCCGGCGCCG
  CCAAGGCCGT CTACGTCCTC GTGGTCCGGC AGCACCAGCT CCTCCCCGGG GAGAACCACC
  TGATTCAGCA CCTTGTGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998233	NES09442916	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C	C	C	C	C	C	C	C	T
ss45725298	mCV22678647	ABI	CRAMUS_MOUSE	f	SNP	C	T					C		C
ss146251761	ENSMUSSNP2842722	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862300					SNP	C	T	C	T	C	T	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998233	NES09442916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45320334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	within coordinates
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	25 bp upstream
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	39 bp upstream
Tssr37061	transcription start site region 37061	51 bp upstream
Tssr37062	transcription start site region 37062	84 bp upstream
Tssr41531	transcription start site region 41531	51 bp upstream
Tssr41532	transcription start site region 41532	42 bp downstream
Tssr41533	transcription start site region 41533	128 bp downstream
Tssr41534	transcription start site region 41534	246 bp downstream