rs27862302 SNP Detail

Summary

• ID
  rs27862302
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACATCA ACTTTGAATA
  TATCTCCAGA TTTAGCGATC ACTATGCCAA TCACGTGGTC CCCTTTCACA GGTACATACT
  AAAAGCAGAA TGAAAGAACA GTCATAAATA ATACAAATAT CATTACAAAA TATCTTCTGA
  AACTTTCATC TAGGTTGATC AGGGTGGGTC TCAACCTATC CAGCCAACTC ATACTCCCCA
  W
  GTAGCTGCAA CTACAAAACC GGCCCGCACC AGTCCAACTT TATGAACGTC TAATTCACAC
  TTGATCAAGT TTCAAGTTTT CTCAGCATCC TTTACAAGTC TGGTGGCACA AGAATCTTTA
  CATTCAAGGA AACCCACTCC ATTTGACATT ATTCCTAAGT GAAAGCTCTT AATTATTCTA
  TGGGAATTTT AATTCCCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998235	NES09442911	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	T	A	T	T	T	T	T	T	T	A
ss146251752	ENSMUSSNP5009088	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862302					SNP	T	A	T	A	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998235	NES09442911	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	210 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	537 bp upstream
Rr100958	regulatory region 100958	within coordinates
Tssr37060	transcription start site region 37060	551 bp upstream
Tssr37061	transcription start site region 37061	563 bp upstream
Tssr37062	transcription start site region 37062	596 bp upstream
Tssr41531	transcription start site region 41531	448 bp downstream
Tssr41532	transcription start site region 41532	554 bp downstream
Tssr41533	transcription start site region 41533	640 bp downstream
Tssr41534	transcription start site region 41534	758 bp downstream