rs27862303 SNP Detail

Summary

• ID
  rs27862303
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:45319522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGGAGGG GGATAGCAGA
  TGTAACTCTT CAACCCGGTA GAAAAGAACC AAGGCTGCAA ACATGACATA CAGCAATACT
  TCTGGAGCCG CAGCGCCTGA GAAACTCTTA TAAACTGTCT TGGAGAACTG GTTTATGCTT
  TGAAGACAAT TCAAGTAGCC CTCTGGATAG TTAACTTTCT CGGGAGTGGA TATTTTTTCT
  Y
  GTTGAAACCA AAGACTCCCA TTATTACCTG CACATTTGGT CTGTTTCTTT TAGTTGCCCC
  TTCAAATGCC AGGTAAGACA AAGACGCTGG CTCACTCCCT CCAACATCAA CTTTGAATAT
  ATCTCCAGAT TTAGCGATCA CTATGCCAAT CACGTGGTCC CCTTTCACAG GTACATACTA
  AAAGCAGAAT GAAAGAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37998236	NES09442908	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T	T	T	T	T	T	C
ss146251739	ENSMUSSNP5262178	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27862303					SNP	T	T	C	T	C	T	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37998236	NES09442908	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:45319522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14233	CpG island 14233	510 bp proximal
Exosc3	exosome component 3	within coordinates
Gm68922	predicted gene, 68922	837 bp upstream
Tssr37060	transcription start site region 37060	851 bp upstream
Tssr37061	transcription start site region 37061	863 bp upstream
Tssr37062	transcription start site region 37062	896 bp upstream
Tssr41531	transcription start site region 41531	748 bp downstream
Tssr41532	transcription start site region 41532	854 bp downstream
Tssr41533	transcription start site region 41533	940 bp downstream
Tssr41534	transcription start site region 41534	1058 bp downstream